Pin down everything - and when a job is done pull out your cut pieces, leaving the waste on the bed. Then if you need to recut because something doesn’t pull out you just shut the lid and hit cut again (you can get fancy and create a copy of the art that only has a cut line where it was missed) but do not re-align anything in your GFUI even if it looks off - it will cut in the exact same place if you haven’t moved the material or bumped your print head.