Another helpful technique is to set up custom color palettes in whatever design software you use – by making sure that all scores, for example, are the exact same color, they will all come into the GUI as a single operation. Same goes for engraves and cuts. If you aren’t already doing so, check out this topic.
I use 4 colors: black, blue, green, and red in all my designs to denote engrave, score, inside cuts (if needed), and outside cuts. This loads them into the GUI in that order, too, making it easy for me to set each operation in a consistent manner.
Good Luck!