I’m going to move this to Beyond the Manual since that’s the only place we can post non-PG settings.
It looks like it’s just not cutting all the way through in some areas, not that it’s ignoring some of the cuts – is that correct? In that case if your optics are clean the next step would be to slow your cut speed down a little bit. Rather than experiment on your artwork and potentially wasting more material, use @evansd2’s test strip to try a range of settings and dial in on the one that cuts best without over-burning.