That shows a significant variance between the cut and the placement…did you run the Lid Camera Calibration yet? (If not, run it, it corrects a lot of that variance.) Make sure you have the front of the tray completely covered with flat material.
After you finish the calibration, you might find that the variance is significantly less…but if not, move the design over to the left a little bit. I think what you are seeing is what happens when the cut lines overlap the gray engrave limits… sometimes it will shorten off the part that overlaps.
When you are placing your design, are you still seeing the gray bar areas?